STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36201.1AMP-binding enzyme; KEGG: bth:BT2154 1.9e-121 putative long-chain-fatty-acid--CoA ligase K01897; Psort location: Cytoplasmic, score: 9.26. (555 aa)    
Predicted Functional Partners:
EFB36202.1
AMP-binding enzyme; KEGG: bth:BT2154 1.9e-130 putative long-chain-fatty-acid--CoA ligase K01897; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 
0.954
EFB35621.1
AMP-binding enzyme; KEGG: bth:BT3550 1.6e-170 long-chain fatty-acid-CoA ligase K01897; Psort location: Cytoplasmic, score: 9.26.
  
  
 
0.908
EFB35924.1
acyl-CoA dehydrogenase, C-terminal domain protein; KEGG: bth:BT1806 7.5e-214 acyl-CoA dehydrogenase K00257; Psort location: Cytoplasmic, score: 8.96.
  
 0.655
EFB36200.1
KEGG: pen:PSEEN3665 4.0e-08 efflux ABC transporter, ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.627
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.594
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.540
EFB36199.1
Aminotransferase, class I/II; KEGG: bfs:BF1601 7.7e-189 putative aspartate aminotransferase K00812.
  
    0.525
EFB35160.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: reh:H16_A0828 4.8e-41 cycS1; signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain; Psort location: CytoplasmicMembrane, score: 7.88.
    
  0.524
EFB34237.1
Phospholipase, patatin family; KEGG: vfi:VF2159 1.6e-60 serine protease; Psort location: OuterMembrane, score: 9.49.
 
 
 0.484
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.471
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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