STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrBKEGG: bfr:BF2208 4.7e-134 aspartate carbamoyltransferase catalytic chain K00609; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (315 aa)    
Predicted Functional Partners:
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
 0.999
EFB36113.1
Amidohydrolase family protein; KEGG: bth:BT0250 2.4e-130 dihydroorotase (DHOase) K01465; Psort location: Cytoplasmic, score: 8.96.
 0.999
carA
Carbamoyl-phosphate synthase, small subunit; KEGG: bfr:BF2636 1.5e-160 glutamine-hydrolyzing carbamoyl phosphate synthetase III K01956; Psort location: Cytoplasmic, score: 8.96; Belongs to the CarA family.
 
 0.999
carB
Carbamoyl-phosphate synthase, large subunit; KEGG: bfr:BF2635 0. carbamyl phosphate synthetase K01955; Psort location: Cytoplasmic, score: 8.96.
 
 0.998
carB-2
Carbamoyl-phosphate synthase, large subunit; KEGG: bfr:BF4035 0. glutamine-dependent carbamyl phosphate synthetase K01955; Psort location: Cytoplasmic, score: 8.96.
 
 0.995
pyrD
Dihydroorotate dehydrogenase 1B; Catalyzes the conversion of dihydroorotate to orotate.
 
 
 0.968
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
  
 0.957
pyrF
KEGG: bth:BT4209 5.1e-105 orotidine 5'-phosphate decarboxylase K01591; Belongs to the OMP decarboxylase family. Type 2 subfamily.
 
  
 0.955
pbuX
Xanthine permease; KEGG: mle:ML2279 3.2e-07 putative transmembrane transport protein K01672; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.948
EFB34510.1
ATP-grasp domain protein; KEGG: reh:H16_A2106 1.1e-22 carB1; carbamoylphosphate synthase, large subunit K01954; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.938
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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