STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36218.1Hypothetical protein; KEGG: chu:CHU_0838 0.0014 CHU large protein; uncharacterized K01238; Psort location: Extracellular, score: 9.64. (890 aa)    
Predicted Functional Partners:
EFB33665.1
LrgB-like protein; KEGG: btl:BALH_3309 1.2e-32 murein hydrolase export regulator K01238; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.676
EFB36219.1
Hypothetical protein.
       0.515
EFB36217.1
Hypothetical protein; KEGG: eci:UTI89_C1627 3.0e-06 entS; EntS/YbdA MFS transporter; Psort location: Extracellular, score: 9.64.
      
0.487
EFB36221.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
     
 0.484
EFB36220.1
Hypothetical protein.
       0.482
EFB36222.1
Glycosyltransferase, group 2 family protein; KEGG: vfi:VFA0478 1.0e-33 N-acetylglucosaminyltransferase K00754; Psort location: CytoplasmicMembrane, score: 9.16.
       0.434
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.