STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36234.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
EFB35242.1
SusD family protein.
  
 
   0.634
EFB36178.1
Hypothetical protein; KEGG: chu:CHU_1557 1.5e-06 CHU large protein; uncharacterized K01238.
  
 
   0.558
EFB34892.1
Peptidase, M56 family; Psort location: CytoplasmicMembrane, score: 9.46.
  
   0.508
EFB36235.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.493
EFB33844.1
Tetratricopeptide repeat protein.
  
 
   0.451
EFB35835.1
Cupin domain protein; KEGG: bsu:BG14148 3.7e-06 oxdC, yvrK; cytosolic oxalate decarboxylase K01569; Psort location: Cytoplasmic, score: 8.96.
 
     0.443
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 
 0.430
EFB36240.1
Nucleoside transporter; KEGG: eci:UTI89_C3355 2.9e-93 nupG; transport of nucleosides, permease protein K03289; Psort location: CytoplasmicMembrane, score: 10.00.
       0.429
EFB35547.1
TonB family domain protein; Psort location: Cytoplasmic, score: 8.96.
   
   0.429
EFB35417.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.429
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.