STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36240.1Nucleoside transporter; KEGG: eci:UTI89_C3355 2.9e-93 nupG; transport of nucleosides, permease protein K03289; Psort location: CytoplasmicMembrane, score: 10.00. (433 aa)    
Predicted Functional Partners:
EFB36239.1
Hypothetical protein.
       0.666
EFB36238.1
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.590
EFB36237.1
Hypothetical protein.
       0.581
EFB36241.1
KEGG: shn:Shewana3_3300 2.0e-08 chromate transporter, chromate ion transporter (CHR) family K00229; Psort location: CytoplasmicMembrane, score: 9.46.
       0.511
EFB36236.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1291 2.7e-19 ABC transporter component K06021; Psort location: CytoplasmicMembrane, score: 7.88.
       0.496
EFB36235.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.460
EFB36242.1
KEGG: shn:Shewana3_3300 0.00090 chromate transporter, chromate ion transporter (CHR) family K00229; Psort location: CytoplasmicMembrane, score: 9.46.
       0.453
EFB36234.1
Hypothetical protein.
       0.429
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.