STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rumA23S rRNA (uracil-5-)-methyltransferase RumA; KEGG: bfs:BF2568 5.1e-176 putative RNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (483 aa)    
Predicted Functional Partners:
EFB36249.1
Phosphate-selective porin O and P.
       0.768
trmB
Putative tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
  
 0.612
EFB35408.1
NOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 7.6e-47 putative 23S rRNA m(5)C methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.608
prmA
KEGG: bfr:BF1624 1.9e-57 ribosomal protein L11 methyltransferase K02687; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.445
EFB33866.1
KEGG: pha:PSHAa1080 8.3e-41 trmH; RNA methyltransferase, TrmH K03437; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.417
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
   
  
 0.408
EFB34985.1
KEGG: chu:CHU_0146 9.7e-47 spoU; RNA methylase, SpoU family K00599; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.407
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.