STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36173.1Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (291 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 
 0.773
EFB36125.1
Response regulator receiver domain protein; KEGG: shn:Shewana3_3829 7.4e-24 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.727
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.710
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.698
EFB34190.1
Hypothetical protein.
    
 
 0.697
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
    0.696
EFB36003.1
Transcriptional regulator, MerR family; KEGG: vfi:VFA0114 7.4e-05 methyltransferase K00599.
  
 
 0.624
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
  
 
 0.600
EFB34072.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ava:Ava_2239 9.6e-62 adenylate/guanylate cyclase K01768; Psort location: CytoplasmicMembrane, score: 7.88.
    
 
 0.570
EFB34078.1
Transcriptional regulator, AraC family; KEGG: msm:MSMEG_3095 4.6e-11 D-ribose-binding periplasmic protein; Psort location: Periplasmic, score: 9.44.
    
 
 0.570
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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