STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36177.1LysM domain protein; KEGG: chu:CHU_2994 0.0012 mltD; peptidoglycan-binding protein with multiple lysin domains K01238. (477 aa)    
Predicted Functional Partners:
EFB36176.1
Hypothetical protein.
 
     0.899
EFB36599.1
Hypothetical protein.
  
     0.760
EFB34182.1
Tetratricopeptide repeat protein.
  
     0.751
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
    0.738
EFB36112.1
Hypothetical protein.
  
     0.735
EFB36516.1
Hypothetical protein.
  
    0.734
EFB35945.1
Hypothetical protein.
  
     0.728
EFB36305.1
Hypothetical protein.
  
     0.727
EFB35642.1
Hypothetical protein.
  
     0.723
EFB36517.1
Hypothetical protein; KEGG: cal:orf19.4072 1.1e-05 HYR10; similar to cell surface flocculin K01186; Psort location: OuterMembrane, score: 9.49.
  
     0.721
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.