STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35946.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
EFB35945.1
Hypothetical protein.
       0.824
EFB34548.1
Positive regulator of sigma(E), RseC/MucC.
  
     0.742
EFB35947.1
Hypothetical protein; KEGG: bth:BT3982 6.2e-139 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K01144.
       0.675
EFB34849.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.673
EFB36962.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.663
EFB35944.1
Putative RNA methyltransferase, RsmD family; KEGG: pub:SAR11_0154 2.3e-22 N6-adenine-specific methylase K00599; Psort location: Cytoplasmic, score: 8.96.
       0.663
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
     0.616
EFB34395.1
Hypothetical protein.
  
     0.563
EFB35412.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
     0.545
EFB33870.1
Phosphate-selective porin O and P.
  
     0.481
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.