STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35978.1Putative DNA-binding protein. (224 aa)    
Predicted Functional Partners:
EFB36333.1
VirE N-terminal domain protein.
  
     0.694
EFB35381.1
VirE N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.661
EFB36634.1
VirE N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.648
EFB35977.1
Hypothetical protein.
       0.571
EFB35889.1
Hypothetical protein.
  
     0.564
EFB34368.1
Hypothetical protein.
  
     0.518
EFB35348.1
PAP2 family protein; KEGG: sce:YDR072C 1.1e-10 IPT1, KTI6, SYR4; Inositolphosphotransferase 1, involved in synthesis of mannose-(inositol-P)2-ceramide (M(IP)2C), which is the most abundant sphingolipid in cells, mutation confers resistance to the antifungals syringomycin E and DmAMP1 in some growth media; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.492
EFB33806.1
Hypothetical protein.
  
     0.472
EFB35347.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.463
EFB35018.1
Hypothetical protein.
  
     0.453
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.