STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36000.1Bacterial transferase hexapeptide repeat protein; KEGG: cgb:cg0155 2.5e-32 putative acetyltransferase K00680; Psort location: Cytoplasmic, score: 8.96. (187 aa)    
Predicted Functional Partners:
cah
Carbonate dehydratase; KEGG: cpr:CPR_0410 4.4e-51 carbonic anhydrase K01672; Psort location: Cytoplasmic, score: 8.96.
    
 0.899
EFB36001.1
Hypothetical protein.
       0.773
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.442
EFB36113.1
Amidohydrolase family protein; KEGG: bth:BT0250 2.4e-130 dihydroorotase (DHOase) K01465; Psort location: Cytoplasmic, score: 8.96.
  
    0.408
trxA
Thioredoxin; KEGG: bur:Bcep18194_A5129 7.0e-21 thioredoxin K01829; Psort location: Cytoplasmic, score: 9.26.
    
   0.403
trxA-2
Thioredoxin; KEGG: hpa:HPAG1_0810 1.6e-21 thioredoxin K05905; Psort location: Cytoplasmic, score: 9.26; Belongs to the thioredoxin family.
    
   0.403
trxA-3
Thioredoxin; KEGG: hpa:HPAG1_0810 2.3e-15 thioredoxin K05905; Psort location: Cytoplasmic, score: 9.26.
    
   0.403
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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