STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSalanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (887 aa)    
Predicted Functional Partners:
EFB36473.1
Tetratricopeptide repeat protein.
  
 0.977
pheT
phenylalanine--tRNA ligase, beta subunit; KEGG: bfr:BF2565 9.8e-292 phenylalanyl-tRNA synthetase beta chain K01890; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.858
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.855
EFB36140.1
Hypothetical protein; KEGG: baf:BAPKO_0675 7.5e-12 recD; exodeoxyribonuclease V, alpha chain K03581; Psort location: Cytoplasmic, score: 8.96.
  
 0.831
EFB33984.1
Hypothetical protein; KEGG: baf:BAPKO_0675 4.5e-11 recD; exodeoxyribonuclease V, alpha chain K03581; Psort location: Cytoplasmic, score: 8.96.
  
 0.831
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.824
EFB36573.1
Tetratricopeptide repeat protein; KEGG: ddi:DDB0204693 1.4e-08 hypothetical protein K00921.
   
 0.814
EFB35548.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 0.0010 serine/threonine protein kinase with TPR repeats K00908.
   
 0.814
EFB34128.1
Tetratricopeptide repeat protein.
   
 0.814
EFB36430.1
Peptidase family M49; KEGG: bth:BT1846 8.7e-220 putative dipeptidyl-peptidase III K01277; Psort location: Cytoplasmic, score: 8.96.
   
 0.813
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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