STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36007.1Transglycosylase SLT domain protein; KEGG: bfs:BF0693 3.2e-126 putative lytic murein transglycosylase K08307. (452 aa)    
Predicted Functional Partners:
EFB36006.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
    0.761
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.759
EFB36008.1
Hypothetical protein.
  
    0.679
purL
Putative phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
 
   
 0.645
EFB34202.1
Competence/damage-inducible domain protein CinA; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
  
 
  0.632
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
    
  0.626
EFB36009.1
ParB-like protein; KEGG: pub:SAR11_0354 1.7e-40 parB; chromosome partitioning protein K03497; Psort location: Cytoplasmic, score: 8.96; Belongs to the ParB family.
  
    0.603
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.584
lepB
KEGG: bth:BT3319 2.7e-145 signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S26 family.
  
    0.569
EFB36011.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; KEGG: cch:Cag_1803 1.6e-78 ATPase, ParA family K03496; Psort location: Cytoplasmic, score: 8.96.
       0.568
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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