STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36026.1PepSY domain protein; Psort location: CytoplasmicMembrane, score: 10.00. (481 aa)    
Predicted Functional Partners:
EFB33671.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 5.7e-145 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.26; Belongs to the sulfur carrier protein TusA family.
    
 0.719
EFB35909.1
Hypothetical protein.
 
  
  0.540
EFB36788.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.527
EFB33915.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.526
EFB34128.1
Tetratricopeptide repeat protein.
  
     0.518
EFB36602.1
Hypothetical protein.
  
     0.433
EFB36030.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.431
EFB35105.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.431
EFB33802.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.430
cysH
Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite.
     
 0.416
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.