STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36036.1LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 9.2e-19 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.654
EFB35160.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: reh:H16_A0828 4.8e-41 cycS1; signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain; Psort location: CytoplasmicMembrane, score: 7.88.
     
 0.540
EFB36037.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.463
EFB36038.1
TrkA C-terminal domain protein; KEGG: chu:CHU_2796 0.0022 pgtB; phosphoglycerate transport; protein for signal transmission; Psort location: CytoplasmicMembrane, score: 10.00.
       0.457
EFB33671.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 5.7e-145 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.26; Belongs to the sulfur carrier protein TusA family.
  
  
 0.447
EFB34684.1
Transcriptional regulator, AraC family; KEGG: shn:Shewana3_3829 1.0e-30 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: CytoplasmicMembrane, score: 9.46.
  
  
 0.432
EFB35606.1
Transcriptional regulator, AraC family; KEGG: shn:Shewana3_3829 1.7e-21 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745.
  
  
 0.414
EFB36704.1
KEGG: lpl:lp_2852 1.0e-28 4-carboxymuconolactone decarboxylase (putative) K01607.
  
  
 0.413
EFB36224.1
KEGG: ava:Ava_2150 2.8e-16 response regulator receiver signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.411
EFB34476.1
KEGG: sma:SAV6546 2.7e-23 putative ABC transporter permease K02028; Psort location: CytoplasmicMembrane, score: 9.92.
  
   
 0.402
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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