STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36037.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (481 aa)    
Predicted Functional Partners:
EFB36038.1
TrkA C-terminal domain protein; KEGG: chu:CHU_2796 0.0022 pgtB; phosphoglycerate transport; protein for signal transmission; Psort location: CytoplasmicMembrane, score: 10.00.
       0.824
EFB36149.1
Hypothetical protein.
  
     0.660
EFB33727.1
KEGG: tel:tlr1749 4.9e-68 fus; translation elongation factor EF-G K02355; Psort location: Cytoplasmic, score: 9.26.
  
 
   0.652
EFB35278.1
Hypothetical protein.
  
     0.501
EFB36036.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 9.2e-19 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family.
       0.463
EFB33995.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.433
trmU
KEGG: bth:BT0155 1.3e-113 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 8.96.
       0.432
EFB36789.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
  
     0.416
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.