STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36040.1Low molecular weight phosphotyrosine protein phosphatase; KEGG: ter:Tery_4026 4.4e-35 protein tyrosine phosphatase K01104; Psort location: Cytoplasmic, score: 8.96; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (173 aa)    
Predicted Functional Partners:
EFB33671.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 5.7e-145 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.26; Belongs to the sulfur carrier protein TusA family.
   
 
 0.665
EFB36648.1
Chain length determinant protein; KEGG: pgi:PG0436 5.2e-103 capsular polysaccharide transport protein, putative K00903; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.638
EFB36903.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: csa:Csal_1693 6.7e-55 undecaprenyl-phosphate galactosephosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.594
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.585
EFB36041.1
TrkA C-terminal domain protein; KEGG: ecj:JW3469 4.0e-08 arsB; arsenite/antimonite transporter K03893; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.584
trxA
Thioredoxin; KEGG: bur:Bcep18194_A5129 7.0e-21 thioredoxin K01829; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.548
trxA-2
Thioredoxin; KEGG: hpa:HPAG1_0810 1.6e-21 thioredoxin K05905; Psort location: Cytoplasmic, score: 9.26; Belongs to the thioredoxin family.
  
 
 0.548
trxA-3
Thioredoxin; KEGG: hpa:HPAG1_0810 2.3e-15 thioredoxin K05905; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.548
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.537
EFB36583.1
Metallo-beta-lactamase domain protein; KEGG: rha:RHA1_ro06903 6.5e-25 possible hydrolase K01069; Psort location: Cytoplasmic, score: 8.96.
   
   0.522
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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