STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36076.1NAD-dependent glycerol-3-phosphate dehydrogenase C-terminal domain protein; KEGG: bfs:BF3603 2.5e-135 putative phospholipids biosynthesis K00057; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (332 aa)    
Predicted Functional Partners:
EFB36116.1
Acyltransferase; KEGG: bfr:BF3148 9.5e-72 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.901
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
 0.901
pgi
KEGG: bfr:BF3812 1.0e-186 glucose-6-phosphate isomerase K01810; Psort location: Cytoplasmic, score: 9.26; Belongs to the GPI family.
  
  
 0.772
lysS
lysine--tRNA ligase; KEGG: bth:BT2122 1.0e-250 lysyl-tRNA synthetase K04567; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.641
EFB36074.1
HAD hydrolase, family IA, variant 3; KEGG: mba:Mbar_A0742 9.9e-22 beta-phosphoglucomutase K01838; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.608
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.568
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: bth:BT4263 1.7e-136 glyceraldehyde 3-phosphate dehydrogenase K00134; Psort location: Cytoplasmic, score: 9.97; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 
 0.554
EFB35093.1
Isochorismatase family protein; KEGG: sto:ST0582 3.6e-24 isochorismatase K05993.
  
   0.515
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.513
EFB34237.1
Phospholipase, patatin family; KEGG: vfi:VF2159 1.6e-60 serine protease; Psort location: OuterMembrane, score: 9.49.
    
 0.491
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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