STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36103.1PhoH family protein; KEGG: reh:H16_A0527 6.1e-61 phoH; phosphate starvation-inducible protein PhoH,predicted ATPase; Psort location: Cytoplasmic, score: 9.97. (329 aa)    
Predicted Functional Partners:
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.837
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.700
purC
KEGG: bfr:BF0918 2.6e-124 phosphoribosylamidoimidazole-succinocarboxamide synthase K01923; Psort location: Cytoplasmic, score: 8.96; Belongs to the SAICAR synthetase family.
       0.679
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
       0.674
EFB36104.1
Hypothetical protein.
       0.674
EFB36100.1
KEGG: bfs:BF0838 3.7e-86 aroE; putative shikimate 5-dehydrogenase K00014.
       0.667
EFB36099.1
Hypothetical protein; KEGG: bfr:BF0911 1.7e-175 putative phosphoribosylformylglycinamidine cyclo-ligase K01933; Psort location: Cytoplasmic, score: 8.96.
       0.591
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.508
pyrF
KEGG: bth:BT4209 5.1e-105 orotidine 5'-phosphate decarboxylase K01591; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.478
EFB35798.1
S1 RNA binding domain protein; KEGG: bfs:BF1566 2.0e-213 rne; putative ribonuclease E; Psort location: Cytoplasmic, score: 9.26.
 
    0.452
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.