STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnAKEGG: bth:BT2129 7.2e-138 aspartate--ammonia ligase K01914; Psort location: Cytoplasmic, score: 9.97. (383 aa)    
Predicted Functional Partners:
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
   
 
  0.874
EFB36199.1
Aminotransferase, class I/II; KEGG: bfs:BF1601 7.7e-189 putative aspartate aminotransferase K00812.
     
 0.873
EFB34067.1
Aminotransferase, class I/II; KEGG: bfr:BF0595 9.4e-168 aspartate aminotransferase K00812.
     
 0.873
EFB35542.1
KEGG: bth:BT3760 5.2e-174 argininosuccinate synthase K01940; Psort location: Cytoplasmic, score: 8.96.
   
 
  0.811
asnB
Asparagine synthase (glutamine-hydrolyzing); KEGG: bfs:BF2661 1.2e-238 asnB; asparagine synthetase B K01953; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.681
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.472
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.433
nspC
KEGG: hpa:HPAG1_0020 2.6e-85 carboxynorspermidine decarboxylase K01618; Psort location: Cytoplasmic, score: 8.96.
     
 0.433
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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