STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36117.1KEGG: chu:CHU_1573 1.4e-70 lgtD; b-glycosyltransferase, glycosyltransferase family 2 protein K00754; Psort location: Cytoplasmic, score: 8.96. (246 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.760
EFB36116.1
Acyltransferase; KEGG: bfr:BF3148 9.5e-72 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655; Psort location: Cytoplasmic, score: 8.96.
       0.661
EFB36887.1
KEGG: chu:CHU_1792 3.4e-92 b-glycosyltransferase, glycosyltransferase family 2 protein K00754; Psort location: CytoplasmicMembrane, score: 9.46.
  
  
 
0.545
gmhB
D,D-heptose 1,7-bisphosphate phosphatase; KEGG: tfu:Tfu_1394 7.4e-39 mannose-1-phosphate guanylyltransferase / phosphomannomutase K00966:K01840; Psort location: Cytoplasmic, score: 8.96.
  
 0.544
EFB36114.1
Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: mca:MCA1545 3.8e-49 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase K00548; Psort location: Cytoplasmic, score: 8.96.
       0.536
EFB36115.1
Ser/Thr phosphatase family protein; KEGG: hpa:HPAG1_0403 2.8e-15 integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.536
EFB36113.1
Amidohydrolase family protein; KEGG: bth:BT0250 2.4e-130 dihydroorotase (DHOase) K01465; Psort location: Cytoplasmic, score: 8.96.
       0.503
EFB36112.1
Hypothetical protein.
       0.468
EFB35848.1
KEGG: chu:CHU_2676 8.2e-82 b-glycosyltransferase, glycosyltransferase family 2 protein.
  
  
  0.415
EFB35265.1
Outer membrane protein; KEGG: rno:309804 0.0088 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208.
  
     0.403
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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