STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36139.1Hypothetical protein; Psort location: OuterMembrane, score: 9.49. (954 aa)    
Predicted Functional Partners:
EFB34928.1
Hypothetical protein.
 
 
 0.932
EFB34069.1
Permease, YjgP/YjgQ family; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.849
EFB36138.1
HDIG domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.793
EFB36137.1
HMGL-like protein; KEGG: bth:BT1697 8.5e-174 pyruvate carboxylase subunit B K01960; Psort location: CytoplasmicMembrane, score: 9.96.
       0.780
yfiO
Outer membrane assembly lipoprotein YfiO.
 
  
 0.774
EFB33863.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 9.49.
  
  
 0.773
EFB36875.1
Tetratricopeptide repeat protein.
 
   
 0.767
EFB36008.1
Hypothetical protein.
  
    0.767
EFB35267.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 10.00.
  
  
 0.748
EFB36816.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
   
 0.746
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.