STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36142.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (216 aa)    
Predicted Functional Partners:
EFB34393.1
Transcriptional regulator, LuxR family; Psort location: CytoplasmicMembrane, score: 9.46.
   
  
 0.720
EFB35913.1
Mg2+ transporter-C family protein; KEGG: eci:UTI89_C4039 2.2e-31 yhiD; hypothetical protein YhiD K07507; Psort location: CytoplasmicMembrane, score: 9.46.
  
  
 0.695
EFB36141.1
Transglycosylase; KEGG: chu:CHU_3131 9.4e-168 ponA; bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family 51 protein.
       0.689
EFB36143.1
Phosphoglycerate mutase family protein; KEGG: bsu:BG13062 5.8e-17 yhfR; similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834.
       0.587
EFB36140.1
Hypothetical protein; KEGG: baf:BAPKO_0675 7.5e-12 recD; exodeoxyribonuclease V, alpha chain K03581; Psort location: Cytoplasmic, score: 8.96.
       0.460
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.