STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36144.1Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bth:BT0409 1.1e-86 putative short-chain dehydrogenase; Psort location: Cytoplasmic, score: 9.97; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (251 aa)    
Predicted Functional Partners:
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.757
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.693
EFB35067.1
Beta-eliminating lyase; KEGG: sac:SACOL1349 1.1e-93 putative threonine aldolase K01620; Psort location: Cytoplasmic, score: 8.96.
    
  0.649
EFB34518.1
AMP-binding enzyme; KEGG: lla:L91510 3.7e-47 dltA; D-alanine activating enzyme K03367; Psort location: Cytoplasmic, score: 9.26.
 
 0.638
EFB36143.1
Phosphoglycerate mutase family protein; KEGG: bsu:BG13062 5.8e-17 yhfR; similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834.
       0.569
EFB33715.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: lic:LIC11929 1.5e-25 short-chain dehydrogenase K00059.
 
  
  0.512
fabD
[acyl-carrier-protein] S-malonyltransferase; KEGG: bth:BT0789 1.2e-121 malonyl CoA-acyl carrier protein transacylase K00645; Psort location: Cytoplasmic, score: 8.96.
  
 0.488
EFB36280.1
Carboxyl transferase domain protein; KEGG: bfr:BF3289 3.6e-214 propionyl-CoA carboxylase beta chain K01966; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.473
fabG
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
0.467
EFB36688.1
Biotin-requiring enzyme; KEGG: bth:BT1688 8.1e-27 bccP; biotin carboxyl carrier protein (BCCP) K01606.
  
 
 0.459
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.