STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36150.1Hypothetical protein. (391 aa)    
Predicted Functional Partners:
EFB36149.1
Hypothetical protein.
 
     0.934
EFB36151.1
Arylsulfatase; KEGG: pha:PSHAa2772 6.4e-23 eptA; lipid A phosphoethanolamine transferase, associated with polymyxin resistance K03760; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.882
EFB35270.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
 
 0.730
yfiO
Outer membrane assembly lipoprotein YfiO.
  
 
 0.699
EFB34733.1
Hypothetical protein.
  
     0.652
thiS
Thiamine biosynthesis protein ThiS; Psort location: Cytoplasmic, score: 8.96.
  
     0.599
EFB35547.1
TonB family domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.577
EFB36827.1
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; KEGG: bth:BT4065 2.0e-149 NADH dehydrogenase I, chain D K00332:K00333; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.530
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
  
 0.486
EFB36148.1
Hypothetical protein.
       0.484
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.