STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36166.1YbbR-like protein. (326 aa)    
Predicted Functional Partners:
yajC
Preprotein translocase, YajC subunit.
       0.824
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.782
EFB34971.1
Hypothetical protein.
  
     0.744
EFB36816.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.742
EFB36958.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.739
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
     0.734
EFB35040.1
Hypothetical protein.
  
     0.723
EFB34461.1
7TM receptor with intracellular HD hydrolase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.719
EFB36167.1
Hypothetical protein.
       0.714
EFB36817.1
Hypothetical protein.
  
    0.695
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.