STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35700.1Hypothetical protein. (789 aa)    
Predicted Functional Partners:
dcm-3
DNA (cytosine-5-)-methyltransferase; KEGG: nma:NMA1035 2.7e-145 nmgII; putative modification methylase K00558; Psort location: Cytoplasmic, score: 8.96.
 
     0.899
EFB35701.1
Helicase C-terminal domain protein; KEGG: cal:orf19.2798 1.9e-38 putative helicase K01152; Psort location: Cytoplasmic, score: 8.96.
  
    0.787
EFB35699.1
DNA-binding helix-turn-helix protein; KEGG: mja:MJ1420 2.9e-05 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB35703.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB35704.1
Hypothetical protein; KEGG: hac:Hac_0362 2.8e-32 type II restriction enzyme K01157.
       0.773
EFB35705.1
LlaJI restriction endonuclease.
       0.773
EFB35706.1
Hypothetical protein.
       0.655
dcm-2
DNA (cytosine-5-)-methyltransferase; KEGG: eci:UTI89_C4938 1.5e-43 hypothetical protein K00558; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.641
vsr
DNA mismatch endonuclease Vsr; KEGG: bfr:BF3683 1.2e-39 putative very-short-patch-repair endonuclease K07458; Psort location: Cytoplasmic, score: 8.96.
 
     0.629
EFB36788.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
   
   0.617
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.