STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35739.1Type I restriction enzyme HsdR protein N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96. (147 aa)    
Predicted Functional Partners:
EFB34290.1
KEGG: aci:ACIAD3431 4.0e-24 putative type I restriction-modification system specificity determinant for hsdM and hsdR (HsdS) K01154.
  
 
 0.832
holA
KEGG: bfr:BF2396 4.6e-95 DNA polymerase III delta subunit K02340.
 
     0.779
EFB34190.1
Hypothetical protein.
  
     0.772
EFB35135.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.750
hemD
KEGG: chu:CHU_0169 6.3e-59 hemD; uroporphyrinogen-III synthase K01719.
  
     0.726
EFB36959.1
Hypothetical protein.
  
     0.723
EFB34945.1
Putative ACR, COG1399; Psort location: Cytoplasmic, score: 8.96.
  
     0.712
EFB34270.1
WbqC-like protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.703
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.702
EFB36169.1
Hypothetical protein.
  
     0.686
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.