STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35758.1OmpA family protein; KEGG: bxe:Bxe_A4171 8.7e-07 putative cytochrome c oxidase K00403; Psort location: OuterMembrane, score: 10.00. (381 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
   0.583
EFB35403.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
 
  0.577
EFB34671.1
OmpA family protein; Psort location: OuterMembrane, score: 9.49.
  
 
 0.570
EFB35264.1
Outer membrane protein.
  
   0.556
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.542
EFB34202.1
Competence/damage-inducible domain protein CinA; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
  0.542
EFB35634.1
Hypothetical protein.
  
 
 0.523
EFB36473.1
Tetratricopeptide repeat protein.
   
 
 0.515
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.514
EFB36007.1
Transglycosylase SLT domain protein; KEGG: bfs:BF0693 3.2e-126 putative lytic murein transglycosylase K08307.
  
 
   0.509
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.