STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35766.1Hypothetical protein. (55 aa)    
Predicted Functional Partners:
recJ
KEGG: bth:BT3939 2.8e-223 recJ; single-stranded-DNA-specific exonuclease recJ K07462; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB35767.1
Peptidase C1-like family; KEGG: lac:LBA0343 3.0e-12 aminopeptidase C K01372; Psort location: Cytoplasmic, score: 9.26; Belongs to the peptidase C1 family.
       0.547
EFB35764.1
KEGG: bth:BT3938 1.1e-194 recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 8.96.
       0.509
EFB35768.1
Peptidase, M24 family; KEGG: bfr:BF4360 9.2e-106 Xaa-Pro aminopeptidase K01262; Psort location: Cytoplasmic, score: 8.96.
       0.403
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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