STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35830.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
EFB35829.1
Transcriptional regulator, LuxR family; KEGG: pha:PSHAa1916 0.00025 uvrY, sirA; response regulator K07689; Psort location: Cytoplasmic, score: 8.96.
 
     0.926
EFB35828.1
Bacterial transferase hexapeptide repeat protein; KEGG: bfr:BF4020 1.8e-63 putative maltose O-acetyltransferase K00661; Psort location: Cytoplasmic, score: 9.97.
       0.779
EFB35827.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.693
EFB35826.1
HD domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.569
EFB34132.1
Zinc-dependent metalloproteinase lipoprotein, BF0631 family.
  
  
  0.540
EFB36317.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.521
EFB35831.1
Antioxidant, AhpC/TSA family; KEGG: chu:CHU_0565 7.1e-28 bcp; bacterioferritin comigratory protein K00435; Psort location: Cytoplasmic, score: 8.96.
       0.485
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.