STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35833.1Phospholipase/carboxylesterase; KEGG: gbe:GbCGDNIH1_1114 0.00023 poly(3-hydroxyalkanoate) depolymerase K01066. (263 aa)    
Predicted Functional Partners:
EFB36046.1
CHC2 zinc finger domain protein; KEGG: rba:RB6344 0.00012 dnaG; DNA primase K02316.
  
     0.606
EFB35832.1
Hypothetical protein.
       0.546
EFB35434.1
Cellulase (glycosyl hydrolase family 5); KEGG: sde:Sde_2636 3.2e-54 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.490
EFB33962.1
Hypothetical protein; KEGG: rba:RB10048 1.9e-59 sialic acid-specific 9-O-acetylesterase.
  
     0.438
EFB36902.1
Hypothetical protein; KEGG: eca:ECA2408 1.7e-35 paeX; pectin acetylesterase.
 
     0.422
EFB35834.1
Hypothetical protein; KEGG: bfr:BF4292 1.5e-09 putative Nudix/MutT family protein K01515; Psort location: Cytoplasmic, score: 8.96.
       0.409
EFB35831.1
Antioxidant, AhpC/TSA family; KEGG: chu:CHU_0565 7.1e-28 bcp; bacterioferritin comigratory protein K00435; Psort location: Cytoplasmic, score: 8.96.
       0.404
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.