STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35837.1Peptidase S24-like protein; KEGG: bfr:BF1863 5.0e-34 error-prone repair: SOS-response transcriptional repressor UmuD homolog K03503; Belongs to the peptidase S24 family. (152 aa)    
Predicted Functional Partners:
EFB35838.1
ImpB/MucB/SamB family protein; KEGG: chu:CHU_1492 1.2e-82 umuC; nucleotidyltransferase/DNA polymerase involved in DNA repair K03502; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.984
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.966
dinB
ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
 
 0.717
EFB33839.1
Hypothetical protein.
  
 
 0.651
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
  
 0.639
EFB36125.1
Response regulator receiver domain protein; KEGG: shn:Shewana3_3829 7.4e-24 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.612
EFB35839.1
Nitroreductase family protein; KEGG: fnu:FN1254 3.0e-20 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase K00357.
       0.512
EFB35836.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bfs:BF1612 1.4e-166 ndh; putative NADH dehydrogenase, FAD-containing subunit K03885.
       0.476
EFB35840.1
Hypothetical protein; KEGG: mja:MJ1519 7.3e-10 recD; exodeoxyribonuclease V K03581.
     
 0.474
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.473
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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