STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35838.1ImpB/MucB/SamB family protein; KEGG: chu:CHU_1492 1.2e-82 umuC; nucleotidyltransferase/DNA polymerase involved in DNA repair K03502; Psort location: Cytoplasmic, score: 8.96. (461 aa)    
Predicted Functional Partners:
EFB35837.1
Peptidase S24-like protein; KEGG: bfr:BF1863 5.0e-34 error-prone repair: SOS-response transcriptional repressor UmuD homolog K03503; Belongs to the peptidase S24 family.
 
 
 0.984
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.928
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
   
   0.833
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.711
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.645
EFB36708.1
Hypothetical protein; KEGG: bth:BT2230 1.6e-09 DNA polymerase III alpha subunit K02337.
  
  
 0.625
EFB36602.1
Hypothetical protein.
    
   0.618
EFB35418.1
Hypothetical protein.
  
 
 0.570
EFB35839.1
Nitroreductase family protein; KEGG: fnu:FN1254 3.0e-20 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase K00357.
       0.512
EFB35840.1
Hypothetical protein; KEGG: mja:MJ1519 7.3e-10 recD; exodeoxyribonuclease V K03581.
   
 
 0.493
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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