STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35839.1Nitroreductase family protein; KEGG: fnu:FN1254 3.0e-20 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase K00357. (173 aa)    
Predicted Functional Partners:
EFB35840.1
Hypothetical protein; KEGG: mja:MJ1519 7.3e-10 recD; exodeoxyribonuclease V K03581.
       0.701
EFB35458.1
Nitroreductase family protein; KEGG: bth:BT2144 1.2e-78 putative oxidoreductase; Psort location: Cytoplasmic, score: 8.96; Belongs to the flavin oxidoreductase frp family.
  
  
  0.543
EFB35837.1
Peptidase S24-like protein; KEGG: bfr:BF1863 5.0e-34 error-prone repair: SOS-response transcriptional repressor UmuD homolog K03503; Belongs to the peptidase S24 family.
       0.512
EFB35838.1
ImpB/MucB/SamB family protein; KEGG: chu:CHU_1492 1.2e-82 umuC; nucleotidyltransferase/DNA polymerase involved in DNA repair K03502; Psort location: Cytoplasmic, score: 8.96.
       0.512
EFB33671.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 5.7e-145 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.26; Belongs to the sulfur carrier protein TusA family.
    
 0.498
EFB36154.1
Hypothetical protein; KEGG: bfs:BF1305 4.5e-81 menE; putative O-succinylbenzoate--CoA ligase K01911; Psort location: Cytoplasmic, score: 8.96.
    
   0.451
EFB34518.1
AMP-binding enzyme; KEGG: lla:L91510 3.7e-47 dltA; D-alanine activating enzyme K03367; Psort location: Cytoplasmic, score: 9.26.
    
   0.451
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 
 0.437
ribF
KEGG: bfs:BF4147 1.2e-78 ribF; putative riboflavin biosynthesis protein RibF K00861:K00953; Psort location: Cytoplasmic, score: 8.96.
    
 0.401
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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