STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35848.1KEGG: chu:CHU_2676 8.2e-82 b-glycosyltransferase, glycosyltransferase family 2 protein. (338 aa)    
Predicted Functional Partners:
EFB35847.1
Radical SAM protein, TIGR01212 family; KEGG: btk:BT9727_4481 2.3e-54 conserved hypothetical protein, possible Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.96.
       0.795
EFB36903.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: csa:Csal_1693 6.7e-55 undecaprenyl-phosphate galactosephosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.726
EFB35849.1
Hypothetical protein.
       0.661
yqeV
tRNA methylthiotransferase YqeV; KEGG: bce:BC4308 2.6e-69 Fe-S oxidoreductase.
       0.630
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.629
ribF
KEGG: bfs:BF4147 1.2e-78 ribF; putative riboflavin biosynthesis protein RibF K00861:K00953; Psort location: Cytoplasmic, score: 8.96.
      0.619
EFB35845.1
Hypothetical protein.
       0.599
EFB36648.1
Chain length determinant protein; KEGG: pgi:PG0436 5.2e-103 capsular polysaccharide transport protein, putative K00903; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.524
EFB36304.1
Starch synthase catalytic domain protein; KEGG: chu:CHU_3836 4.7e-54 glgA; glycogen synthase-related protein K00703; Psort location: Cytoplasmic, score: 8.96.
  
  
  0.518
EFB35734.1
Putative zinc ribbon domain protein; KEGG: cal:orf19.6763 4.2e-05 SLK19; protein involved in control of spindle dynamics together with kar3p K00870; Psort location: Cytoplasmic, score: 8.96.
  
     0.516
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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