STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35859.1Hypothetical protein; KEGG: pub:SAR11_0536 0.0086 tktC; transketolase family K00615; Psort location: Cytoplasmic, score: 8.96. (422 aa)    
Predicted Functional Partners:
EFB35860.1
Hypothetical protein.
       0.588
EFB35861.1
Hypothetical protein; KEGG: ctc:CTC00579 6.5e-07 sbcC; exonuclease sbcC K03546; Psort location: OuterMembrane, score: 9.49.
       0.565
EFB34202.1
Competence/damage-inducible domain protein CinA; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
    
 0.555
EFB35858.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.503
dcm-4
DNA (cytosine-5-)-methyltransferase; KEGG: bth:BT4754 4.2e-35 putative cytosine-specific methyltransferase K00558; Psort location: Cytoplasmic, score: 8.96; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.487
EFB35034.1
HipA-like C-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
  
   0.461
EFB36796.1
Hypothetical protein.
    
 
 0.436
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.416
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.