STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsdRType I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1014 aa)    
Predicted Functional Partners:
EFB34290.1
KEGG: aci:ACIAD3431 4.0e-24 putative type I restriction-modification system specificity determinant for hsdM and hsdR (HsdS) K01154.
 
 
 0.985
EFB35868.1
KEGG: sha:SH0064 5.7e-161 hsdM; type I restriction-modification system DNA methylase K03427; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.981
EFB35869.1
KEGG: mma:MM0430 2.7e-44 type I restriction-modification system specificity subunit K01154.
 
  
 0.950
EFB34830.1
N-6 DNA Methylase; KEGG: bth:BT4518 7.3e-216 Type I restriction enzyme StySJI M protein K03427.
  
 
 0.756
EFB33943.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.716
EFB35867.1
Hypothetical protein.
       0.610
EFB34828.1
Type I restriction modification DNA specificity domain protein; KEGG: spr:spr0448 7.7e-38 hsdS; type I site-specific deoxyribonuclease chain S K01152.
 
  
 0.527
EFB34638.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.472
EFB33852.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.472
EFB34844.1
Hypothetical protein; KEGG: pab:PAB2150 2.5e-14 type I restriction-modification enzyme, S subunit K01154; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.458
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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