STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35893.1ComEC/Rec2-like protein; Psort location: CytoplasmicMembrane, score: 10.00. (433 aa)    
Predicted Functional Partners:
dprA
DNA protecting protein DprA.
 
  
 0.791
EFB35229.1
Hypothetical protein; KEGG: chu:CHU_3495 6.5e-18 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.755
EFB35306.1
Hypothetical protein; KEGG: chu:CHU_0354 2.5e-39 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.752
EFB35236.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 2.9e-166 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.745
EFB34625.1
Putative DNA protecting protein DprA.
 
  
 0.738
EFB35160.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: reh:H16_A0828 4.8e-41 cycS1; signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain; Psort location: CytoplasmicMembrane, score: 7.88.
  
    0.543
pheT
phenylalanine--tRNA ligase, beta subunit; KEGG: bfr:BF2565 9.8e-292 phenylalanyl-tRNA synthetase beta chain K01890; Psort location: Cytoplasmic, score: 9.26.
 
   
 0.498
gdhA
KEGG: bfr:BF3607 7.3e-200 NADP-specific glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.26; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.449
EFB35925.1
S23 ribosomal protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.429
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.425
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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