STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35547.1TonB family domain protein; Psort location: Cytoplasmic, score: 8.96. (173 aa)    
Predicted Functional Partners:
EFB34893.1
Transcriptional regulator, BlaI/MecI/CopY family; KEGG: bcz:BCZK0993 4.5e-10 blaI; beta-lactamase (penicillinase) repressor K01467.
  
 
 0.815
EFB35549.1
Hypothetical protein.
  
   0.812
EFB35546.1
LytTr DNA-binding domain protein.
       0.793
EFB35548.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 0.0010 serine/threonine protein kinase with TPR repeats K00908.
   
   0.767
EFB35403.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
   
 
 0.699
EFB36603.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 10.00.
  
   0.664
EFB34064.1
Hypothetical protein.
 
   0.663
EFB34730.1
Transporter, MotA/TolQ/ExbB proton channel family protein; Psort location: CytoplasmicMembrane, score: 9.46.
 
 
 0.657
EFB36524.1
Fibronectin type III domain protein.
  
 
  0.622
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
   0.619
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.