STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35576.1PASTA domain protein; KEGG: mbo:Mb0014c 9.7e-08 pknB; transmembrane serine/threonine-protein kinase B PknB (protein kinase B) (StpK B) K08884; Psort location: Cytoplasmic, score: 8.96. (244 aa)    
Predicted Functional Partners:
EFB36683.1
FHA domain protein.
   
 
 0.835
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.806
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.795
EFB35577.1
Hypothetical protein.
       0.773
EFB36819.1
Hypothetical protein; KEGG: chu:CHU_3268 1.0e-32 peptidyl-prolyl cis-trans isomerase K01802.
  
     0.754
EFB36875.1
Tetratricopeptide repeat protein.
  
     0.750
EFB35368.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.748
EFB35575.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.735
EFB36816.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.727
EFB34928.1
Hypothetical protein.
 
     0.720
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.