STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
radCDNA repair protein RadC; Belongs to the UPF0758 family. (229 aa)    
Predicted Functional Partners:
EFB35580.1
Glycosyltransferase, group 2 family protein; KEGG: pto:PTO0268 4.9e-14 glycosyltransferase K00754; Psort location: Cytoplasmic, score: 8.96.
  
    0.697
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.599
EFB35582.1
Putative FeS assembly SUF system protein; KEGG: mba:Mbar_A2421 9.5e-12 serine O-acetyltransferase / hypothetical protein (multi-domain) K00640; Psort location: Cytoplasmic, score: 8.96.
       0.569
mreC
Rod shape-determining protein MreC.
  
  
 0.558
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.520
EFB35229.1
Hypothetical protein; KEGG: chu:CHU_3495 6.5e-18 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 8.96.
 
    0.477
EFB35160.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: reh:H16_A0828 4.8e-41 cycS1; signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain; Psort location: CytoplasmicMembrane, score: 7.88.
   
    0.470
EFB35583.1
Ser/Thr phosphatase family protein; KEGG: bfr:BF0482 1.1e-102 UDP-2,3-diacylglucosamine hydrolase K03269.
  
    0.469
mutL
DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
 
   
 0.409
EFB36766.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.406
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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