STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35603.1SusD family protein. (508 aa)    
Predicted Functional Partners:
EFB35604.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
 
   0.967
EFB35600.1
KEGG: ehi:224.t00010 6.0e-09 leucine rich repeat protein K01768.
 
   
 0.916
EFB35598.1
Peptidase, S8/S53 family; KEGG: sru:SRU_2299 4.8e-37 peptidase families S8 and S53 domain protein; Psort location: Extracellular, score: 9.71.
 
  0.864
EFB33945.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.795
EFB35599.1
Leucine Rich Repeat protein; KEGG: ath:At5g25930 0.0091 F18A17.4; receptor-related protein kinase - like K00924; Psort location: OuterMembrane, score: 9.49.
  
  0.793
EFB35602.1
Hypothetical protein.
  
    0.760
EFB36930.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
     0.752
EFB36929.1
SusD family protein.
  
     0.749
EFB35107.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.742
EFB35243.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
  
 
   0.731
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.