STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35609.1Hypothetical protein. (469 aa)    
Predicted Functional Partners:
EFB35611.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
 
   0.952
EFB35610.1
SusD family protein.
 
  
 0.940
EFB35608.1
Glycosyl hydrolase, family 53; KEGG: sde:Sde_3710 1.9e-75 arabinogalactan endo-1,4-beta-galactosidase K01224.
 
    0.841
EFB35606.1
Transcriptional regulator, AraC family; KEGG: shn:Shewana3_3829 1.7e-21 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745.
 
   
 0.793
EFB35441.1
SusD family protein.
  
  0.779
EFB36848.1
SusD family protein.
  
  0.775
EFB33882.1
TonB-dependent receptor.
  
 
   0.773
EFB33894.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
 
   0.759
EFB36929.1
SusD family protein.
  
  0.756
EFB33876.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
 
   0.753
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.