STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35681.1TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49. (1074 aa)    
Predicted Functional Partners:
EFB35682.1
Hypothetical protein.
 
     0.929
EFB35242.1
SusD family protein.
  
     0.686
EFB35610.1
SusD family protein.
  
     0.682
EFB35603.1
SusD family protein.
 
     0.661
EFB36848.1
SusD family protein.
  
     0.635
EFB35451.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.49.
  
     0.633
EFB33946.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
     0.625
EFB34696.1
SusD family protein.
  
     0.622
EFB35441.1
SusD family protein.
  
     0.611
EFB35683.1
Hypothetical protein.
       0.596
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.