STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35329.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
EFB34892.1
Peptidase, M56 family; Psort location: CytoplasmicMembrane, score: 9.46.
  
 
   0.788
EFB34080.1
SusD family protein.
 
 
   0.691
EFB36925.1
SusD family protein.
  
 
   0.679
EFB35417.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
   0.651
EFB36848.1
SusD family protein.
  
 
   0.633
EFB35431.1
Hypothetical protein.
  
 
   0.618
EFB33946.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
 
   0.587
EFB35242.1
SusD family protein.
  
 
   0.584
EFB34682.1
SusD family protein.
  
 
   0.572
EFB34945.1
Putative ACR, COG1399; Psort location: Cytoplasmic, score: 8.96.
  
     0.571
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.