STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35348.1PAP2 family protein; KEGG: sce:YDR072C 1.1e-10 IPT1, KTI6, SYR4; Inositolphosphotransferase 1, involved in synthesis of mannose-(inositol-P)2-ceramide (M(IP)2C), which is the most abundant sphingolipid in cells, mutation confers resistance to the antifungals syringomycin E and DmAMP1 in some growth media; Psort location: CytoplasmicMembrane, score: 10.00. (278 aa)    
Predicted Functional Partners:
EFB35347.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
 
    0.959
EFB35349.1
CDP-alcohol phosphatidyltransferase; KEGG: bth:BT1523 7.5e-56 CDP-diacylglycerol-inositol 3-phosphatidyltransferase K00995; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
 
 0.920
pgpA
KEGG: bth:BT1525 7.7e-38 phosphatidylglycerophosphatase A K01095; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.846
EFB35537.1
Inositol-3-phosphate synthase; KEGG: bth:BT1526 2.9e-148 myo-inositol-1-phosphate synthase K01858; Psort location: Cytoplasmic, score: 8.96.
 
     0.679
pgpA-2
KEGG: bth:BT1525 8.5e-32 phosphatidylglycerophosphatase A K01095; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.673
EFB35346.1
Hypothetical protein.
       0.671
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.659
EFB36790.1
SusD family protein.
  
 
   0.630
EFB36154.1
Hypothetical protein; KEGG: bfs:BF1305 4.5e-81 menE; putative O-succinylbenzoate--CoA ligase K01911; Psort location: Cytoplasmic, score: 8.96.
   
  0.614
EFB34518.1
AMP-binding enzyme; KEGG: lla:L91510 3.7e-47 dltA; D-alanine activating enzyme K03367; Psort location: Cytoplasmic, score: 9.26.
   
  0.613
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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