STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35353.1Hypothetical protein. (867 aa)    
Predicted Functional Partners:
EFB36816.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.679
EFB35354.1
Transcriptional regulator, LuxR family; KEGG: fal:FRAAL1304 9.0e-12 putative protein-glutamate methylesterase; Psort location: Cytoplasmic, score: 8.96.
       0.668
EFB34892.1
Peptidase, M56 family; Psort location: CytoplasmicMembrane, score: 9.46.
  
   0.660
rnpA
Putative ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.612
EFB36684.1
Sporulation and cell division repeat protein.
  
     0.603
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.602
EFB35422.1
Alpha-2-macroglobulin family protein.
  
     0.590
EFB36178.1
Hypothetical protein; KEGG: chu:CHU_1557 1.5e-06 CHU large protein; uncharacterized K01238.
  
 
   0.570
EFB34063.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.566
EFB35348.1
PAP2 family protein; KEGG: sce:YDR072C 1.1e-10 IPT1, KTI6, SYR4; Inositolphosphotransferase 1, involved in synthesis of mannose-(inositol-P)2-ceramide (M(IP)2C), which is the most abundant sphingolipid in cells, mutation confers resistance to the antifungals syringomycin E and DmAMP1 in some growth media; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.558
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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