STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35359.1Putative serine O-acetyltransferase; KEGG: bth:BT3256 2.2e-104 serine acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.97. (313 aa)    
Predicted Functional Partners:
cysK
Cysteine synthase A; KEGG: bth:BT3080 2.2e-120 cysteine synthase A K01738; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.994
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
    
 0.911
cysS
cysteine--tRNA ligase; KEGG: bth:BT3351 7.4e-207 cysteinyl-tRNA synthetase K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.896
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
     
 0.886
EFB36549.1
KEGG: bfr:BF1265 1.3e-163 L-serine dehydratase K01752; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.882
EFB35157.1
KEGG: msm:MSMEG_5947 8.2e-18 cysE; serine O-acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.26.
  
  
  0.840
EFB35360.1
THUMP domain protein; KEGG: fnu:FN0344 1.1e-52 methyltransferase K07444; Psort location: Cytoplasmic, score: 8.96; Belongs to the methyltransferase superfamily.
       0.824
EFB36648.1
Chain length determinant protein; KEGG: pgi:PG0436 5.2e-103 capsular polysaccharide transport protein, putative K00903; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.803
EFB35361.1
Peptidase, S9A/B/C family, catalytic domain protein; KEGG: ccr:CC2154 3.3e-85 dipeptidyl peptidase IV K01278; Psort location: Periplasmic, score: 9.44.
       0.744
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.715
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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