STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB35366.1ABC transporter, ATP-binding protein; KEGG: cch:Cag_1675 1.2e-34 ATPase K02074; Psort location: Cytoplasmic, score: 9.12. (233 aa)    
Predicted Functional Partners:
EFB35365.1
ABC transporter, substrate-binding protein; Psort location: CytoplasmicMembrane, score: 8.02.
 
 
 0.999
EFB34129.1
ABC 3 transport family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
EFB35367.1
Hypothetical protein.
       0.732
EFB35368.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.732
EFB35363.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.703
EFB35364.1
SNARE-like domain protein; KEGG: oih:OB2407 3.4e-12 alkaline phosphatase K01077; Psort location: CytoplasmicMembrane, score: 9.46.
       0.703
purD
KEGG: bth:BT3253 2.1e-163 phosphoribosylamine--glycine ligase K01945; Psort location: Cytoplasmic, score: 8.96; Belongs to the GARS family.
       0.674
EFB35369.1
KEGG: ava:Ava_1295 1.0e-28 polysaccharide deacetylase K01452; Psort location: Cytoplasmic, score: 9.26.
       0.564
EFB36236.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1291 2.7e-19 ABC transporter component K06021; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.547
EFB35361.1
Peptidase, S9A/B/C family, catalytic domain protein; KEGG: ccr:CC2154 3.3e-85 dipeptidyl peptidase IV K01278; Psort location: Periplasmic, score: 9.44.
       0.515
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.